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A Comprehensive Approach to Pesticide Residue Testing, Including Non-Target Analysis, for Fruits, Vegetables, and Nuts, Using QuEChERS, LC-MS/MS, and GCxGC-TOFMS

By Julie Kowalski1, Jack Cochran1, Jason Thomas1, Michelle Misselwitz1, Rebecca Wittrig2*, and André Schreiber3

1Restek Corporation, 110 Benner Circle, Bellefonte, Pennsylvania 16823, USA
2AB SCIEX, 353 Hatch Drive, Foster City, California 94404, USA
3AB SCIEX Research and Development, 71 Four Valley Drive, Concord, Ontario, Canada L4K 4V8
*Current address: Restek Corporation, 110 Benner Circle, Bellefonte, Pennsylvania 16823, USA


Food commodities were fortified with pesticides and processed using the QuEChERS sample preparation technique. Samples were analyzed by both GCxGC-TOFMS and LC-MS/MS. The foods chosen varied in water, fat, and pigment content, so the ruggedness of QuEChERS as well as the performance of GCxGC-TOFMS and LC-MS/MS could be assessed. Commodities tested were red bell pepper, cucumber, black seedless grape, spinach, lemon, raisin, and hazelnut. Recovery values were determined by matrix-matched standards for the GC method and by solvent standards for the LC method. Evaluation of GCxGC-TOFMS and LC-MS/MS, along with the QuEChERS approach itself, was made by comparison of recovery values and incurred pesticide concentrations.

Good recoveries were obtained for most pesticides in most commodities as determined by GCxGC-TOFMS and LC-MS/MS. Sometimes GCxGC-TOFMS did not have the selectivity necessary for determining certain pesticides in the most complex samples. In this regard, dispersive SPE (dSPE) cleanup was ineffective at removing significant matrix interferences in lemon, raisin, and hazelnut extracts for some target pesticides. Corrupted LC-MS/MS quantification for some pesticides was observed, especially in lemon and hazelnut extracts, and likely resulted from ion suppression or was due to quantification by solvent-only standards. Incurred pesticide quantifications were comparable for GCxGC-TOFMS and LC-MS/MS. GCxGC-TOFMS was able to identify non-target pesticides.


Pesticide residue testing of food has traditionally been performed using gas chromatography (GC), but there is increasing use of liquid chromatography (LC) with tandem mass spectrometry (MS/MS). LC is favored for polar, less thermally-stable, less volatile, compounds. GC-MS is preferred for volatile, thermally-stable species, and pesticides that do not ionize well in electrospray or atmospheric pressure chemical ionization LC sources. With MS, complete chromatographic resolution of compounds is not always essential, as selected ions or selected reaction monitoring (SRM) transitions are used for pesticide identification and quantification. However, data quality can be improved through better retention and separation of components, especially for structurally similar pesticides and high-level matrix coextractives. In GC, this better separation can come from comprehensive two-dimensional GC (GCxGC), an approach involving two separations on an orthogonal column set in a single analytical run. A fast time-of-flight (TOF) MS records data from the ~100 ms wide peaks produced by the GCxGC separation. TOFMS records full mass spectral data to accomplish simultaneous target and non-target compound analysis. In LC, multiresidue pesticide methods based on standard C18 columns suffer from poor retention of small polar analytes. In addition, coelutions can be problematic if the analytes share MRM transitions. These difficulties can be improved by using a column that is both selective for small, polar compounds and that has balanced retention for a large number of compounds that vary in physiochemical properties. More balanced retention reduces the number of MRM transitions being monitored at any point in time, and improves data quality by allowing more time to be spent on a smaller number of MRM transitions.

QuEChERS (Quick–Easy–Cheap–Effective–Rugged–Safe) is a sample preparation approach developed by Anastassiades et al. [1] as a simple, rapid, effective, yet inexpensive, way to extract pesticide residues from fruits and vegetables, followed by a dispersive solid phase extraction (dSPE) cleanup of the extract. It is well established that QuEChERS can result in good recovery values not only for a large number of pesticides, but also for a wide variety of commodities [2,3,4]. In this work, the QuEChERS extraction approach was used for red bell pepper, cucumber, lemon, raisin, spinach, hazelnut, and black grape with subsequent pesticide determinations by LC-MS/MS and GCxGC-TOFMS. Benefits and weaknesses of the sample preparation and analysis approaches are reported.


Chemicals and Materials

QuEChERS extraction and dSPE tubes, as well as QuEChERS internal and quality control standards, were from Restek Corporation (Bellefonte, Pennsylvania). A standard consisting of approximately 200 pesticides prepared in acetonitrile, was provided by the U.S. Food and Drug Administration/Center for Food Safety and Applied Nutrition. Food commodities were purchased at a local grocery store; the foods and their countries of origin are as follows: English cucumber (Canada), lemon (U.S.), black seedless grape (U.S.), red bell pepper (Mexico), spinach (U.S.), raisin (U.S.), and shelled hazelnut (U.S.)

Sample Wetting

Dry commodities, such as raisin and hazelnut, must be wetted prior to QuEChERS extraction. Wetting ratio recommendations from the EN 15622 QuEChERS method were used [5]. For raisin, 5 grams of homogenized raisin and 8.5 mL of deionized water were combined in a 50 mL centrifuge tube. For hazelnut, 10 mL water was added to 5 grams of homogenized hazelnut in a 50 mL centrifuge tube. These mixes of raisin and water and hazelnut and water are considered as “10 g homogenized sample” in the following sections.

Commodity Fortification

Commodities were first homogenized. For cucumber, lemon (the rind was not removed prior to homogenization), grape, red bell pepper, and spinach, a 10 gram sample of the commodity was weighed into a 50 mL centrifuge tube and fortified at 10 ng/g (ppb) by adding 100 µL of a 1 ng/µL pesticide spiking solution. Raisin and hazelnut samples were fortified at 10 ng/g (ppb) by adding 50 µL of a 1 ng/µL pesticide spiking solution because only 5 grams of material was used. 100 µL of QuEChERS internal standard mix for GC-MS analysis (cat.# 33267) and 100 µL of QuEChERS internal standard mix for LC-MS/MS analysis (cat.# 33261) were added to each sample. These internal standard mixes require no dilutions (“snap-and-shoot”) and contain compounds specified in the EN 15662 QuEChERS method [5].

Unfortified samples were also prepared to determine incurred and non-target pesticides, and were also used to produce matrix-matched standards for GCxGC-TOFMS.

QuEChERS Extraction

The EN 15662 QuEChERS method was used for sample extraction [5]. First, 10 mL of acetonitrile were added to each homogenized sample. After a 1 minute manual shake, Q-sep QuEChERS extraction salts (cat.# 26235) containing 4 g MgSO4, 1 g NaCl, 1 g trisodium citrate dihydrate, and 0.5 g disodium hydrogen citrate sesquihydrate were added. At this point, lemon samples were pH adjusted by adding 600 µL of a 5 N (equivalent to a 5 M [molar, mol/L]) sodium hydroxide solution to the extraction tube. Following another 1 minute shake, samples were centrifuged for 5 minutes at 3,000 g with a Q-sep 3000 centrifuge (cat.# 26230). The top acetonitrile layer (extract) was transferred to a clean vial.

QuEChERS Dispersive Solid Phase Extraction (dSPE) Cleanup

Restek Q-sep QuEChERS dSPE tubes (cat.# 26216), containing 25 mg primary secondary amine (PSA), 25 mg octadecyl (C18), and 150 mg magnesium sulfate (MgSO4), were used for 1 mL sample cleanup. Each tube was manually shaken for 30 seconds and then centrifuged for 5 minutes at 3,000 g. The resulting final extract was then analyzed directly by GCxGC-TOFMS. For LC-MS/MS analysis, the extract was diluted 10X with deionized water.

Matrix-Matched Standards and Solvent Standards for Calibration and Quantification

Calibration standards were prepared at 10 ng/mL (pg/µL), as these were the expected final concentrations in 10 ng/g (ppb) fortified samples, assuming 100% compound recovery. Matrix-matched standards for GCxGC-TOFMS were prepared by adding pesticide standard solution to a final (post-cleanup) extract of an unfortified sample. For GCxGC-TOFMS analysis, actual recoveries were calculated by comparing response factors for compounds in fortified samples that were extracted and cleaned up, to response factors for compounds in a matrix-matched standard, using the internal standard quantification method with PCB 52 from the QuEChERS internal standard mix for GC-MS analysis (cat.# 33267) added prior to extraction. For LC-MS/MS analysis, standards in solvent were used for recovery calculations.

GCxGC-TOFMS Analysis

A LECO Pegasus 4D GCxGC-TOFMS was used and all data were processed with ChromaTOF software (Saint Joseph, Michigan). Gas chromatography was performed using a 30 m x 0.25 mm x 0.25 µm Rxi-5Sil MS column (cat.# 13623) for the first dimension and a 1.5 m x 0.18 mm x 0.20 µm Rtx-200 column (piece cut from cat.# 45001) for the second dimension. The carrier gas was a corrected constant flow of helium at 1.8 mL/min. A 1 µL sample was introduced with a fast autosampler splitless injection. The inlet was set to 250 °C and was outfitted with a 5 mm single taper liner with wool (cat.# 22973-200.1). The purge valve time was 1.0 minutes. The primary GC oven program was 90 °C (1 min), 4 °C/min to 310 °C and hold 2 minutes, and the secondary oven temperature program was 100 °C (1 min), 4 °C/min to 320 °C with a 2 minute hold. The modulation time was 4 seconds. Electron ionization at 70 eV was used with a source temperature of 225 °C and a transfer line temperature of 290 °C. Data acquisition was from 45 to 550 amu at a rate of 100 spectra/sec.

LC-MS/MS Analysis

A Shimadzu UFLCXR LC (Columbia, Maryland) and AB SCIEX 4000 QTRAP LC-MS/MS system with Turbo V source (Foster City, California) were used for LC-MS/MS analysis. Analysis was performed using a 100 mm x 2.1 mm, 3 µm Ultra Aqueous C18 column (cat.# 9178312) with a 10 µL injection. Extracts were diluted by a factor of 10 with deionized water before analysis, resulting in an injection concentration of 1 ppb for each pesticide. A mobile phase gradient of water with 10 mM ammonium acetate and methanol with 10 mM ammonium formate and flow rate of 0.5 mL/min were used. Compounds were ionized with either positive or negative electrospray ionization. Two transitions were monitored in Scheduled MRM (sMRM) mode for each analyte as listed in Table I.

Table I: Pesticides and corresponding classes chosen for data analysis are listed here. GCxGC-TOFMS first and second dimension retention times, as well as the quantification ions, are shown. The LC-MS/MS retention time and two MRM transitions are shown for each pesticide.

Pesticide Class tR1
MRM Transition 1
MRM Transition 2
Propoxur N-Methyl carbamate 372 1.60 110 5.46 210.1 → 111 210.1 → 168.1
Methamidophos Organophosphorus 444 2.70 141 1.14 142 → 94 142 → 125
Acephate Organophosphorus 772 3.63 136 1.35 184.1 → 143 184.1 → 125
Propham Other carbamate 824 1.90 179 6.21 180 → 138 180 → 120
1-Naphthol Breakdown product 908 1.73 144 NA NA → NA NA → NA
o-Phenylphenol Phenol 916 1.59 170 NA NA → NA NA → NA
Tebuthiuron Urea 924 2.52 156 6.18 229.2 → 172.4 229.2 → 116.1
Omethoate Organophosphorus 1032 3.88 156 1.83 214 → 124.9 214 → 182.8
Dimethoate Organophosphorus 1252 3.03 125 3.91 230 → 125 230 → 199.1
Prometon Triazine 1292 1.78 168 7.27 226.1 → 142.1 226.1 → 86
Terbacil Uracil 1388 2.63 161 NA NA → NA NA → NA
Pirimicarb N-Methyl carbamate 1436 2.13 166 6.74 239.2 → 72.1 239.2 → 182.2
Metribuzin Triazinone 1492 1.78 198 5.56 215.1 → 187.2 215.1 → 84.1
Fuberidazole Benzimidazole 1512 2.22 184 5.95 185 → 157 185 → 65
Carbaryl N-Methyl carbamate 1520 2.62 144 6.11 202.1 → 145 202.1 → 127
Metalaxyl Xylylalanine 1540 2.39 160 6.58 280.2 → 220.2 280.2 → 192.3
Terbutryn Triazine 1584 1.77 226 7.93 242.2 → 186.1 242.2 → 68.1
Ethofumesate Unclassified 1596 2.71 161 6.97 304 → 121 304 → 161
Benthiocarb Thiocarbamate 1628 1.74 257 NA NA → NA NA → NA
Cyprodinil Pyrimidine 1724 1.62 224 8.51 226 → 93 226 → 77
Thiabendazole Benzimidazole 1756 1.95 174 6.17 202.1 → 175.1 202.1 → 131.2
Furalaxyl Xylylalanine 1776 2.21 242 7.04 302.1 → 95.1 302.1 → 242.1
Triadimenol Triazole 1780 2.18 168 7.47 296.1 → 70.1 296.1 → 227.2
Siduron Urea 1876 2.35 93 6.96 233.3 → 137.2 233.3 → 94
Imazalil Imidazole 1884 2.43 173 8.42 297.1 → 159.2 297.1 → 161.2
Fludioxonil Pyrrole 1888 2.73 248 NA NA → NA NA → NA
Myclobutanil Triazole 1924 2.84 179 7.60 289 → 70 289 → 125
Buprofezin Unclassified 1936 1.77 172 8.84 306.2 → 201.1 306.2 → 116.2
Oxadixyl Anilide 2016 3.67 163 5.31 279.2 → 219.2 279.2 → 132.1
Mepronil Anilide 2068 2.02 119 7.26 270.1 → 119.1 270.1 → 228
Carfentrazone ethyl Unclassified 2100 2.43 312 7.90 412 → 346 412 → 366
Fenhexamid Anilide 2116 1.94 177 7.48 302 → 97 302 → 55
Propargite Organosulfur 2188 1.74 173 9.08 368 → 231 368 → 175
Piperonyl butoxide Unclassified 2200 1.46 176 8.90 356.2 → 177.2 356.2 → 119
Pyriproxyfen Juvenile hormone mimic 2380 1.47 136 9.01 322 → 96 322 → 185
Fenarimol Pyrimidine 2416 2.02 219 7.72 331 → 268 331 → 81
Bitertanol Triazole 2508 1.95 170 8.34 338 → 70 338 → 269
Prochloraz Iimidazole 2544 2.69 180 8.62 376.1 → 308 376.1 → 70.1
Pyraclostrobin Strobin 2784 1.92 132 8.30 388 → 194 388 → 163
Azoxystrobin Strobin 2904 2.26 344 7.20 404.1 → 372.1 404.1 → 344.1
Dimethomorph Morpholine 2920 2.31 301 7.63 388.2 → 301.1 388.2 → 165.2

Results and Discussion

GCxGC Separation

The GCxGC method was optimized to provide maximum separation of pesticides in two dimensions. Figure 1A shows a contour plot of the pesticide standard produced by GCxGC-TOFMS. In this plot, the x-axis is the retention time axis for the first dimension Rxi-5Sil MS column. The y-axis corresponds to the retention time scale of the Rtx-200 secondary column, and intensity data is depicted by color with red being the most intense and blue representing baseline. Figure 1B (magnification) demonstrates the increased resolving power of comprehensive two-dimensional gas chromatography. With one-dimensional GC, the following pairs of pesticides would coelute, but are separated in the second dimension: carbaryl and simetryn, metalaxyl and ametryn, and linuron and ethofumesate. This increased separation power is important for multiresidue pesticide methods consisting of a large number of compounds, and for separating large matrix interferences from trace-level analytes.

Figure 1:   Contour plot of the pesticide standard produced by GCxGC-TOFMS. Both full scale and magnified images show good separation of pesticides using an Rxi-5Sil MS column in the first dimension and an Rtx-200 column in the second dimension.

A. Full scale (View larger)

Select Carbamate, Organophosphorus, Aniline, Conazole, Phenylurea, Strobilurin, and Triazine Pesticides by GCxGC-TOFMS Using Rxi-5Sil MS and Rtx-200

B. Enlarged area (View larger)

Zoom of Pesticide Standard by GCxGC-TOFMS Using Rxi-5Sil MS and Rtx-200
ColumnRxi-5Sil MS 30 m, 0.25 mm ID, 0.25 µm (cat.# 13623)
Rtx-200 1.5 m, 0.18 mm ID, 0.20 µm (cat.# 45001)
SamplePesticide standard
Inj. Vol.:1 µL splitless (hold 1 min)
Liner:Gooseneck splitless (5 mm) w/deactivated wool (cat.# 22973-200.1)
Inj. Temp.:250 °C
Purge Flow:40 mL/min
Oven Temp.:Rxi-5Sil MS: 90 °C (hold 1 min) to 310 °C at 4 °C/min (hold 2 min)
Rtx-200: 100 °C (hold 1 min) to 320 °C at 4 °C/min (hold 2 min)
Carrier GasHe, corrected constant flow (1.8 mL/min)
Modulator Temp. Offset:25 °C
Second Dimension Separation Time:4 sec
Hot Pulse Time:1.2 sec
Cool Time between Stages:0.8 sec
Transfer Line Temp.:290 °C
Analyzer Type:TOF
Source Temp.:225 °C
Electron Energy:70 eV
Mass Defect:-20 mu/100 u
Solvent Delay Time:5 min
Tune Type:PFTBA
Ionization Mode:EI
Acquisition Range:45-550 amu
Spectral Acquisition Rate:100 spectra/sec
InstrumentLECO Pegasus 4D GCxGC-TOFMS
NotesRtx-200 (cat.# 45001) is a 10 m column. A 1.5 m section was cut off and used as the second dimension column.

Commodity Type Characterizations

The commodities used for this pesticide residue testing of food study represent different foods that vary in water content, fat content, pigment intensity, and acidity/basicity, and were expected to present different levels of difficulty in both extraction of pesticides and instrumental analysis. Lemon (including rind), cucumber, red bell pepper, grape, and spinach all have high water content, which is characteristic of the type of sample used to develop the original QuEChERS approach. Hazelnut has high fat content and is dry like raisin, which makes application of a QuEChERS procedure more difficult. As noted in the Experimental section, water must be added to dry samples to increase extraction efficiency. Higher fat content can lead to suppressed extraction efficiencies for hydrophobic pesticides, especially given that hydrophilic acetonitrile is used as the QuEChERS solvent. Lemon is acidic and spinach is basic. Some pesticides undergo degradation at pH extremes, so buffering is used to minimize this problem.

The QuEChERS extraction of the commodities in this work showed a wide spectrum of pigment intensities (Figure 2). Hazelnut, raisin, and lemon resulted in light colored extracts. Grape and spinach produced dark, pigment-rich extracts, while red bell pepper and cucumber produced mid-intensity extracts. Appreciably colored extracts contain nonvolatile pigments, like chlorophyll, that cannot be chromatographed by GC. If left in the sample these compounds rapidly contaminate the GC inlet liner, the inlet bottom seal, and the front of the GC column, resulting in performance issues and increased instrument maintenance. One strategy for the removal of chlorophyll and other pigments is using graphitized carbon black (GCB) during dSPE. Unfortunately, GCB can lead to serious losses of planar pesticides, so we avoided its use in favor of PSA and C18 dSPE. Given that most of the pesticides in this work are determined better by liquid chromatography where chlorophyll in the sample is a less significant issue, it was more important to try to maximize recoveries of all pesticides rather than to produce a completely pigment-free extract.

Figure 2:   Photographs of QuEChERS extracts of studied commodities before dSPE cleanups were performed.

 QuEChERS extracts

We assessed the complexity of different commodities by examining the total ion chromatogram (TIC) contour plots generated by GCxGC-TOFMS. Figure 3 shows TIC plots for two commodities, grape and lemon, which represent the range from least complex to most complex, as determined by a GC approach. It is clear that the lemon sample contained many more coextractives than the grape sample as demonstrated by the large number of intense (red) signals. While it should be possible to successfully analyze QuEChERS grape extracts for pesticides by one-dimensional GC, multidimensional techniques (e.g. GCxGC-MS or GC-MS/MS or LC-MS/MS) are necessary for determining pesticides in lemon.

Figure 3:   GCxGC-TOFMS contour plots for grape and lemon QuEChERS extracts. The lemon extract is much more complex than the grape extract and could not be analyzed by one-dimensional GC.

Black seedless grape (View larger)

GCxGC-TOFMS Chromatogram of QuEChERS Extract of Black Seedless Grapes Using Rxi-5Sil MS and Rtx-200

See Figure 1 for GCXGC-TOFMS conditions

Lemon (View larger)

GCxGC-TOFMS Chromatogram of QuEChERS Extract of Lemon Using Rxi-5Sil MS and Rtx-200

See Figure 1 for GCXGC-TOFMS conditions

Pesticide Determinations

Of the more than 200 pesticides in the standard, over 150 were analyzed by LC-MS/MS. Many of the pesticides were not amenable to GC analysis due to their lack of volatility, high polarity, or poor thermal stability, so only 65 were determined using GCxGC-TOFMS. For brevity, 41 pesticides representing each chemical class (Table I) will be discussed here. Of these 41 representative pesticides, ten were analyzed by GCxGC-TOFMS only (acephate, 1-naphthol, o-phenylphenol, terbacil, pirimicard, benthiocarb, triadimenol, fludioxonil, fenarimol, and bitertanol). Imazalil showed calibration problems in every matrix except for lemon with GCxGC. Spinach extracts were not analyzed with LC-MS/MS, but GCxGC-TOFMS data are reported.

The QuEChERS sample preparation approach combined with GCxGC-TOFMS and LC-MS/MS showed successful pesticide detections and quantitative analysis for pepper, cucumber, grape, and spinach samples (Table II). Matrix compounds interfered with the determination of a few pesticides in raisin and hazelnut when analyzed by GCxGC-TOFMS, including propoxur (raisin, hazelnut), siduron (raisin), and buprofezin (hazelnut). Propoxur and siduron have relatively low m/z quantification ions (110, 93) in electron ionization MS, which fall in the range of many of the ions produced by coextractives in complex food extracts. Even GCxGC did not have the selectivity to chromatographically move the coextractive interferences away in these few cases. Interestingly, GC-MS/MS would likely not yield better results since a low m/z ion precursor ion would yield very low m/z product ions, a situation where coextractives could again produce high-biased quantification. LC-MS/MS has the advantage in this case with soft electrospray ionization, which yields higher m/z ions that, when subjected to MS/MS, show greater selectivity and less bias. This can be seen in Table II for propoxur, siduron, and buprofezin in raisin and hazelnut extracts, where LC-MS/MS produced reasonable recovery values.

Lemon proved to be a difficult matrix demonstrated by the fact that 11 pesticides were not detected by LC-MS/MS and two pesticides had interfering compounds using the GCxGC-TOFMS method. The pesticides not detected in lemon by LC were propham, fuberidazole, cyprodinil, thiabendazole, mepronil, fenhexamid, propargite, piperonyl butoxide, pyriproxyfen, prochloraz, and pyraclostrobin. Given lemon’s complexity, ion suppression from coelution with coextractives is the likely culprit for the non-detects. There were coextractives interfering with propoxur and terbacil that prevented their determination using the GC method. These interference cases demonstrate that GCxGC-TOFMS did not always have the selectivity necessary for determining certain pesticides in the most complex samples. In this regard, dispersive SPE cleanup was ineffective at removing certain matrix interferences for lemon, raisin, and hazelnut extracts. Complex matrices like these might benefit from a more exhaustive sample cleanup. For example, we have used a cartridge SPE method to remove more matrix coextractives from QuEChERS extracts of dietary supplements, which resulted in good pesticide recovery values [6].

Pesticide Recovery Values

GCxGC-TOFMS and LC-MS/MS percent recovery values for the 41 representative pesticides in each commodity are listed in Table II. Percent recovery values were reasonable, most above 80%, for both GC and LC techniques, which demonstrates QuEChERS extraction efficiency for a large range of pesticide types. A summary examination of method performance was revealed by distilling data from Table II to an average recovery value for each commodity/analysis method combination (Figure 4).

Table II: Percent recovery values from QuEChERS sample preparation for the selected pesticides as determined by GCxGC-TOFMS and LC-MS/MS for each commodity. (IP = incurred pesticides, NA = not analyzed, ND = not detected, and INT = affected by interferences).

Pesticide Red Bell Pepper Cucumber Black Grapes Lemon Raisin Hazelnut Spinach
Propoxur 72 99 100 99 92 110 INT 75 INT 120 INT 100 120
Methamidophos IP IP 130 76 170 73 79 66 73 48 78 73 93
Acephate IP NA 48 NA 73 NA 88 NA 82 NA 78 NA 64
Propham 110 88 110 77 100 50 130 ND 94 66 78 80 100
1-Naphthol IP NA 86 NA 95 NA 110 NA 97 NA 87 NA 120
o-Phenylphenol 86 NA 70 NA 91 NA 100 NA 96 NA 81 NA 99
Tebuthiuron 140 100 110 88 92 90 110 42 110 110 100 100 86
Omethoate IP IP 56 98 68 98 100 89 66 96 87 65 83
Dimethoate IP IP 92 94 93 91 100 79 98 94 94 98 77
Prometon 79 89 110 76 96 73 110 47 100 96 82 87 93
Terbacil 100 NA 100 NA 110 NA INT NA 91 NA 83 NA 83
Pirimicarb 110 NA 96 NA 98 NA 100 NA 100 NA 90 NA 100
Metribuzin 100 110 98 80 110 76 110 58 87 26 110 41 98
Fuberidazole 50 89 77 46 96 85 98 ND 86 88 94 82 120
Carbaryl IP IP 88 170 120 150 72 14 100 190 86 160 77
Metalaxyl IP IP 120 81 93 81 95 52 89 76 86 78 93
Terbutryn 92 93 100 79 100 79 99 4 97 84 64 51 91
Ethofumesate 110 80 100 85 110 120 81 19 86 77 100 77 82
Benthiocarb 110 NA 86 NA 85 NA 110 NA 95 NA 56 NA 94
Cyprodinil 87 63 IP IP 99 86 91 ND 80 55 57 6.4 84
Thiabendazole IP 76 110 19 110 70 83 ND 65 72 68 57 100
Furalaxyl 90 88 100 89 130 85 110 37 95 86 85 87 97
Triadimenol 68 NA 93 NA 110 NA 100 NA 110 NA 120 NA 80
Siduron 98 110 96 88 98 96 120 35 INT 100 89 79 130
Imazalil NA IP NA 87 NA 70 IP IP NA 130 NA 58 NA
Fludioxonil 84 NA IP NA 120 NA 96 NA 100 NA 89 NA 100
Myclobutanil IP IP 120 73 130 110 100 13 76 100 91 87 90
Buprofezin 110 70 100 90 IP IP 94 24 80 110 INT 68 85
Oxadixyl 110 90 110 83 120 90 97 40 100 99 130 98 82
Mepronil 99 110 88 84 120 91 100 ND 91 97 88 ND 97
Carfentrazone ethyl 110 150 81 170 110 150 110 74 81 220 100 180 80
Fenhexamid IP 38 89 82 120 51 87 ND 67 75 75 49 99
Propargite 110 73 85 100 110 130 100 ND 79 110 75 110 79
Piperonyl butoxide 140 IP 120 93 110 95 110 ND 92 110 80 98 110
Pyriproxyfen 99 64 77 86 96 100 99 ND 100 90 63 62 91
Fenarimol 67 NA 58 NA 89 NA 100 NA 81 NA 99 NA 91
Bitertanol 150 NA 85 NA 92 NA 110 NA 60 NA 110 NA 100
Prochloraz 53 73 48 55 78 80 100 ND 83 70 83 17 87
Pyraclostrobin 150 84 59 61 110 92 61 ND 55 130 53 94 53
Azoxystrobin 100 100 64 94 98 86 110 30 91 94 88 120 88
Dimethomorph 220 52 82 91 90 98 97 25 80 69 110 54 84

These average recovery values were produced using data from pesticides that could be quantified, excluding pesticides that were not analyzed, not detected, incurred, or suffered from interferences. As with Table II data, Figure 4 shows the QuEChERS approach worked well, as demonstrated by the average recovery values between 80 to 110 % for most commodities and for both analysis methods. A notable exception was for lemon as determined by LC-MS/MS where average percent recovery for pesticides was just above 40%. The good GCxGC-TOFMS recovery values for lemon indicate that the QuEChERS sample preparation approach was not the cause of the low LC-MS/MS low values. In fact, low recovery values and non-detected pesticides are not unexpected, as other researchers have demonstrated extreme ion suppression for citrus fruits when using LC-MS/MS [7,8,9]. Results may be improved by adding a fat freezing step after the QuEChERS extraction to remove waxes, using a cleanup with higher sorbent capacity like cartridge SPE, or by increasing the sample dilution factor to minimize LC-MS/MS matrix effects.

Figure 4:  Average percent recovery values shown for each commodity determined by both GCxGC-TOFMS and LC-MS/MS. Ion suppression led to apparent low pesticide recovery values for LC-MS/MS analysis of lemon extract.

Percent recovery values

Incurred Target Pesticides

Incurred target pesticides were detected in four of the seven commodities tested, including red bell pepper, lemon, grape, and cucumber. Concentrations for incurred pesticides as determined using QuEChERS with GCxGC-TOFMS and LC-MS/MS are shown in Table III. In general, there was good agreement between incurred pesticide concentrations for GCxGC-TOFMS and LC-MS/MS, with the exception of methamidophos and carbaryl in red bell pepper.

The number of incurred pesticides detected by GCxGC-TOFMS and LC-MS/MS is also comparable; however, GCxGC-TOFMS detected two additional incurred pesticides in red bell pepper, thiabendazole and fenhexamid, and one additional incurred pesticide in cucumber, fludioxonil. LC-MS/MS detected incurred pesticides in red bell pepper that either could not be analyzed or were not found using the GC method, including thiamethoxam, clothianidin, imidacloprid, propamocarb, diphenylamine, spinosyn A, and spinosyn D.

Table III: Incurred target pesticides and calculated ppb concentration determined by QuEChERS extraction with GCxGC-TOFMS and/or LC-MS/MS. (NA = not analyzed, ND = not detected)

Pesticide Concentration (ppb)
Red Bell Pepper
Methamidophos 370 130
Acephate 560 NA
1-Naphthol 98 NA
o-Phenylphenol 0.62 NA
Omethoate 37 43
Dimethoate 58 57
Carbaryl 300 520
Metalaxyl 5.5 5.3
Thiabendazole 12 ND
Imazalil NA 2.5
Myclobutanil 4.9 3.2
Fenhexamid 4.7 ND
Piperonyl butoxide 0.99 2.2
Bitertanol 0.40 NA
Imazalil 460 540
Black Seedless Grape
Buprofezin 2.3 3.7
Cyprodinil 100 95
Fludioxonil 30 NA

Figure 5 shows GC and LC chromatograms of red pepper extract from which incurred pesticides were determined. The GCxGC-TOFMS chromatogram demonstrates the power of that technique, especially for metalaxyl, which was accurately identified and quantified because the second dimension separated the peak from a more intense matrix component (below the metalaxyl peak on the contour plot). The LC-MS/MS chromatogram shows adequate retention and good peak shape for early eluting polar compounds (e.g. methamidophos and omethoate) by using the polar modified/functionally bonded aqueous C18 column. As noted above, LC-MS/MS detected incurred pesticides that either could not be analyzed or were not found using the GC method.

Figure 5:   GCxGC-TOFMS contour plot showing incurred dimethoate, carbaryl, and metalaxyl pesticides in a QuEChERS extract of red bell pepper (A). The LC-MS/MS chromatogram (B) of incurred pesticides found in red bell pepper extract includes compounds that either could not be analyzed, or were not found, using GC.

A. GCxGC-TOFMS (View larger)

GCxGC-TOFMS Chromatogram of QuEChERS Extract of Red Bell Pepper Showing Incurred Pesticides Using Rxi-5Sil MS and Rtx-200

See Figure 1 for GCXGC-TOFMS conditions


12.Spinosyn A
13.Spinosyn D
Incurred Pesticides in Red Bell Pepper QuEChERS Extract on Ultra Aqueous C18
ColumnUltra Aqueous C18 (cat.# 9178312)
Dimensions:100 mm x 2.1 mm ID
Particle Size:3 µm
Pore Size:100 Å
SampleQuEChERS extract of red bell pepper
Nicarbazin (bis-nitrophenol urea) (cat.# 33261)
Diluent:Deionized water:acetonitrile (90:10)
Inj. Vol.:10 µL
Mobile Phase10 mM ammonium acetate in water:10 mM ammonium formate in methanol with gradient program
Flow:0.5 mL/min
DetectorAB SCIEX API 4000 LC/MS/MS System
Ion Source:TurboIonSpray®
Ion Mode:ESI+
InstrumentAPI LC-MS/MS
NotesInternal Standard: 100 µL of QuEChERS internal standard mix for GC-MS analysis (cat.# 33267) and 100 µL of QuEChERS internal standard mix for LC-MS/MS analysis (cat.# 33261) were added to each 10 g sample. These internal standard mixes require no dilutions (“snap-and-shoot”) and contain compounds specified in the EN 15662 QuEChERS method.

Extraction: 10 mL acetonitrile was added to a 10 gram sample of homogenized red bell pepper. After a 1 minute shake, Q-sep European method extraction salts (cat.# 26236) were added followed by another 1 minute shake. The sample was then centrifuged with a Q-sep 3000 centrifuge (cat.# 26230).

dSPE: Add 1 mL extract to QuEChERS dSPE cleanup tube containing 150 mg MgSO4, 25 mg PSA, and 25 mg C18 (cat.# 26216). Shake for 30 seconds and centrifuge with Q-sep 3000 centrifuge (cat.# 26230).

Non-Target Pesticide Analysis with GCxGC-TOFMS

GCxGC-TOFMS can perform non-targeted and targeted analysis simultaneously because full mass spectral information is recorded during the entire analysis time. Automatic peak finding, spectral deconvolution, and library searching allowed full mass spectral data to be mined for pesticides not on the original GCxGC-TOFMS target compound list, e.g. imazalil in lemon. Other examples include the detection of endosulfans I and II, and endosulfan sulfate in red bell pepper extract. Figure 6 shows the contour plot for the elution region of the endosulfans and endosulfan sulfate, as well as the mass spectrum of endosulfan sulfate from the red bell pepper sample and the NIST library spectrum.

Figure 6:   Contour plot region for elution area of endosulfans and endosulfan sulfate in a QuEChERS extract of red bell pepper, as well as spectral comparison of endosulfan sulfate from the red bell pepper sample and the NIST library.

A. Contour plot (View larger)

GCxGC-TOFMS Chromatogram of QuEChERS Extract of Red Bell Pepper Showing Incurred Pesticides Using Rxi-5Sil MS and Rtx-200

See Figure 1 for GCXGC-TOFMS conditions

B. Endosulfan sulfate mass spectra from red bell pepper sample (top) and NIST library (bottom)

SPECTRA ONLY: GCxGC-TOFMS Chromatogram of QuEChERS Extract of Red Bell Pepper Showing Incurred Pesticides Using Rxi-5Sil MS and Rtx-200

See Figure 1 for GCXGC-TOFMS conditions


The pesticide residue analysis of food work presented here demonstrates that the QuEChERS sample preparation approach worked well for a variety of pesticides and commodities. In general, good pesticide recoveries were achieved for the QuEChERS approach as determined by both GCxGC-TOFMS and LC-MS/MS. However, more difficult matrices like lemon, raisin, and hazelnut proved to be a challenge. Sometimes GCxGC-TOFMS did not have the selectivity necessary for determining certain pesticides in the most complex samples, indicating dispersive SPE cleanup was unsuccessful at removing high-concentration, coeluting matrix interferences in lemon, raisin, and hazelnut extracts. Ion suppression and/or solvent standard calibration (versus matrix-matched standard calibration) adversely affected LC-MS/MS quantification for some pesticides, especially in lemon and hazelnut extracts. Generally, incurred pesticide quantifications were comparable for GCxGC-TOFMS and LC-MS/MS. Advantages and disadvantages of each methodology, QuEChERS, GCxGC-TOFMS, and LC-MS/MS, presented themselves during this work, which highlighted the utility of QuEChERS and the desire for comprehensive and complementary instrumental determinations.


U.S. Food and Drug Administration/Center for Food Safety and Applied Nutrition; LECO Corporation


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